SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine learning method
Adriano de Bernardi Schneider, Michelle Su, Angie S. Hinrichs, Jade Wang, Helly Amin, John Bell, Debra A. Wadford, Aine Niamh O’Toole, Emily Scher, Marc D. Perry, Yatish Turakhia, Nicola De Maio, Scott Hughes, Russell B Corbett-Detig
This study compares pangoLEARN and pUShER for SARS-CoV-2 lineage assignment, finding pUShER more stable and accurate across pangolin versions.
Virus Evolution · Jan 1, 2024Peer-reviewedBioinformatics