Adriano de Bernardi Schneider

This study compares pangoLEARN and pUShER for SARS-CoV-2 lineage assignment, finding pUShER more stable and accurate across pangolin versions.

This study evaluates subsampling strategies to optimize ancestral trait reconstruction in HIV-1 subtype C datasets, showing that subsampling by collection date, location, and risk group improves representativeness and reduces computational burden.

The paper updates the phylogeny of Chikungunya virus and identifies lineage-specific RNA architecture in its untranslated regions.

StrainHub constructs pathogen transmission networks using phylogenetic trees and metadata to identify key nodes for infection control.

The paper analyzes Musashi binding elements in Zika and related Flavivirus 3’UTRs using a thermodynamic model to show ZIKV MBEs are maximally accessible and linked to neurotropism.