Author

James B. Brown

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Biology Disciplines

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Bioinformatics· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Approach:experimental assay· 1 Assay:imaging· 1

Frequent Co-Authors

Dong Li· 1 shared Guyu Hu· 1 shared Ishan Mohanty· 1 shared Kenneth Kreutz-DelgadoiD· 1 shared Luisa Orsini· 1 shared Mita BanikiD· 1 shared Nidhi SinghiD· 1 shared Shan He· 1 shared

Activity by Year

2016-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 16 mutual co-author links

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1 shared paperBioinformatics

Dong Li

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2 papers

Recent·Most cited

Adaptive Example Selection: Prototype-Based Explainability for Interpretable Mitosis Detection

Mita Banik, Kenneth Kreutz-Delgado, Ishan Mohanty, James B. Brown, Nidhi Singh

This paper introduces Adaptive Example Selection (AES), an XAI framework for mitosis detection that enhances model interpretability by comparing test cases with annotated prototypes.

bioRxiv · Mar 5, 2025 · PreprintPathology

MODA: MOdule Differential Analysis for weighted gene co-expression network

Dong Li, James B. Brown, Luisa Orsini, Zhisong Pan, Guyu Hu, Shan He

MODA identifies differentially expressed subnetworks in gene co-expression networks using transcriptomic data from synthetic and Daphnia magna datasets.

bioRxiv · Jun 3, 2016 · PreprintBioinformatics