Author

Shan He

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Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Research Focus:gene regulatory network inference· 1 Approach:optimal transport· 1

Frequent Co-Authors

Dong Li· 2 shared Guyu Hu· 1 shared James B. Brown· 1 shared Luisa Orsini· 1 shared Zhisong Pan· 1 shared

Activity by Year

2016-2016 · peak 2/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

Dong Li

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2 papers

Recent·Most cited

MODA: MOdule Differential Analysis for weighted gene co-expression network

Dong Li, James B. Brown, Luisa Orsini, Zhisong Pan, Guyu Hu, Shan He

MODA identifies differentially expressed subnetworks in gene co-expression networks using transcriptomic data from synthetic and Daphnia magna datasets.

bioRxiv · Jun 3, 2016 · PreprintBioinformatics

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

Dong Li, Shan He

The paper introduces a method to identify active modules in multi-layer weighted gene co-expression networks using continuous optimization, validated on synthetic and real data with an R package.

bioRxiv · Jun 3, 2016 · PreprintBioinformatics