Author

James S Fraser

Primary ORCID profile (0000-0002-5080-2859 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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James S FraseriD1 paper · University of California San Francisco

Biology Disciplines

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:cryo-EM· 1 Approach:deep learning· 1 Research Focus:protein folding & dynamics· 1 Research Focus:protein structure prediction· 1 Assay:structural biology· 1

Frequent Co-Authors

Aaron S Brewster· 1 shared Ana Gonzalez· 1 shared Andrew H Van Benschoten· 1 shared Benjamin A Barad· 1 shared Frank DiMaio· 1 shared Lin Liu· 1 shared Michael Wall· 1 shared Nathaniel Echols· 1 shared

Activity by Year

2015-2016 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBiophysics

Aaron S Brewster

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2 papers

Recent·Most cited

Measuring and modeling diffuse scattering in protein X-ray crystallography

Andrew H Van Benschoten, Lin Liu, Ana Gonzalez, Aaron S Brewster, Nicholas K Sauter, James S Fraser, Michael Wall

This paper measures and models diffuse scattering in protein X-ray crystallography using cyclophilin A and trypsin crystals, showing that LLM and NM models better agree with diffuse data than TLS models.

Proceedings of the National Academy of Sciences · Mar 28, 2016Peer-reviewedBiophysics

Side-chain-directed model and map validation for 3D Electron Cryomicroscopy

Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser

This paper introduces EMRinger, a method to validate atomic models against cryo-EM maps by analyzing side-chain dihedral angles, showing its utility in model refinement and radiation damage assessment.

bioRxiv · Feb 3, 2015Biophysics