Author

Yifan Cheng

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Biophysics· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Assay:cryo-EM· 3 Approach:deep learning· 3 Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:imputation· 1 Research Focus:protein folding & dynamics· 1

Frequent Co-Authors

Frank DiMaio· 2 shared Ray Yu-Ruei Wang· 2 shared Benjamin A Barad· 1 shared Benjamin Barad· 1 shared David Agard· 1 shared Eugene Palovcak· 1 shared James Fraser· 1 shared James S Fraser· 1 shared

Activity by Year

2015-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersBiochemistry

Frank DiMaio

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3 papers

Recent·Most cited

Anisotropic Correction of Beam-induced Motion for Improved Single-particle Electron Cryo-microscopy

Shawn Zheng, Eugene Palovcak, Jean-Paul Armache, Yifan Cheng, David Agard

The paper develops an algorithm to correct anisotropic beam-induced motion in cryo-electron microscopy, improving resolution and reconstruction quality.

bioRxiv · Jul 4, 2016Biophysics

Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta

Ray Yu-Ruei Wang, Yifan Song, Benjamin Barad, Yifan Cheng, James Fraser, Frank DiMaio

This paper introduces an automated method to refine atomic structures from near-atomic-resolution cryo-EM maps, improving model geometry and fit-to-density while detecting and correcting backbone placement errors.

bioRxiv · Apr 26, 2016Biochemistry

Side-chain-directed model and map validation for 3D Electron Cryomicroscopy

Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser

This paper introduces EMRinger, a method to validate atomic models against cryo-EM maps by analyzing side-chain dihedral angles, showing its utility in model refinement and radiation damage assessment.

bioRxiv · Feb 3, 2015Biophysics