Author

Jen Smith

California NanoSystems Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Synthetic Biology· 1

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Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Aqib HasnainiD· 1 shared Dennis M. JoshyiD· 1 shared Enoch YeungiD· 1 shared Shara Balakrishnan· 1 shared Steven B. HaaseiD· 1 shared

Activity by Year

2022-2022 · peak 1/yr

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1 shared paperSynthetic Biology

Aqib HasnainORCID

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1 paper

Recent·Most cited

Learning perturbation-inducible cell states of novel compounds from observability analysis of transcriptome dynamics

Aqib Hasnain, Shara Balakrishnan, Dennis M. Joshy, Jen Smith, Steven B. Haase, Enoch Yeung

The paper develops a machine learning approach to identify perturbation-inducible genes from time-series RNA-seq data, applying it to discover malathion-responsive promoters in Pseudomonas fluorescens.

bioRxiv · May 27, 2022 · PreprintSynthetic Biology