Author

Aqib Hasnain

University of California, Santa BarbaraORCID 0000-0002-2057-7953Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Aqib Hasnain1 paper · Lawrence Berkeley National Laboratory

Biology Disciplines

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Synthetic Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:bacteria (other)· 1 Approach:deep learning· 1 Organism:E. coli· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Enoch YeungiD· 2 shared Shara Balakrishnan· 2 shared Amin Espah BorujeniiD· 1 shared Christopher A. VoigtiD· 1 shared Dennis M. JoshyiD· 1 shared Diveena Becker· 1 shared Jen Smith· 1 shared Joshua A. UrrutiaiD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersSystems Biology

Enoch YeungORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintJun 29, 2023

Disentangling gene expression burden identifies generalizable phenotypes induced by synthetic gene networks

Aqib Hasnain, Amin Espah Borujeni, Yongjin Park…·Enoch Yeung

The paper identifies synthetic gene network-induced phenotypes by analyzing gene expression in E. coli and validates them through antibiotic resistance experiments.

DOI 10.1101/2023.06.29.547078

E. colibulk RNA-seq

Synthetic BiologybioRxivPreprintMay 27, 2022

Learning perturbation-inducible cell states of novel compounds from observability analysis of transcriptome dynamics

Aqib Hasnain, Shara Balakrishnan, Dennis M. Joshy…·Enoch Yeung

The paper develops a machine learning approach to identify perturbation-inducible genes from time-series RNA-seq data, applying it to discover malathion-responsive promoters in Pseudomonas fluorescens.

1 citation

bacteria (other)bulk RNA-seq