Author

Jianyun Ma

Shanghai Institute of Nutrition and Health

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:eQTL / molecular QTL mapping· 1 Organism:mouse· 1

Frequent Co-Authors

Cirong LiuiD· 2 shared Yuxuan LiuiD· 2 shared Bolin Yang· 1 shared Bufan Jin· 1 shared Chao LiiD· 1 shared Chengming ZhangiD· 1 shared Chengyu LiiD· 1 shared Chengyu LiiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersNeuroscience

Cirong LiuORCID

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Author profile →

2 papers

Recent·Most cited

A Population-scale Single-cell Spatial Transcriptomic Atlas of the Human Cortex

Lei Han, Zhen Liu, Lifang Wang, Yuxuan Liu, Yanrong Wei, Jianyun Ma, Youzhe He, Yichen Zuo, Jiao Fang, Hui Yang, Xiang Zou, Zihan Wu, Min Wang, Wei Liu, Gao Li, , Wei Wu

This study creates a single-cell spatial transcriptomic atlas of the human cortex, revealing gene expression patterns, aging effects, and disease associations across layers and species.

bioRxiv · Oct 13, 2025 · PreprintNeuroscience

BrainBeacon: A Cross-Species Foundation Model for Single-cell Resolved Brain Spatial Transcriptomics

Chengming Zhang, Yiwen Yang, Yifeng Jiao, Qianqian Yang, Xin Guo, Jing Xu, Jiyang Li, Yuanyuan Zhou, Zhen Liu, Yushuai Wu, Yu Zhang, Jiang Chen, Jianyun Ma, Yuxuan Liu, Yao Zhang, , Wu Wei

BrainBeacon is a cross-species foundation model for whole-brain spatial transcriptomics that enables cross-species alignment and uncovers spatial regulatory mechanisms of aging.

bioRxiv · Jul 8, 2025 · PreprintBioinformatics