Author

Jiaying Xu

Shanghai Jiao Tong UniversityPrimary ORCID profile (0009-0004-1919-1465 · 2 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Jiaying XuiD2 papers · Salk Institute for Biological Studies

Biology Disciplines

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Cell Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:large language model· 1

Frequent Co-Authors

Pan DengiD· 2 shared Peiran Jin· 2 shared Zekun Guo· 2 shared Cuiting Zhong· 1 shared Fusong JuiD· 1 shared Haiguang LiuiD· 1 shared Hongyi XiniD· 1 shared Huanhuan XiaiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Pan DengORCID

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2 papers

Recent·Most cited

RegDesign-Bench: Benchmarking computational methods for cell-type-specific regulatory DNA design

Jiaying Xu, Zekun Guo, Cuiting Zhong, Qijin Yin, Yuan He, Zeyu Chen, Hongyi Xin, Peiran Jin, Pan Deng

RegDesign-Bench evaluates computational methods for designing cell-type-specific regulatory DNA, showing that performance on individual metrics does not guarantee overall effectiveness.

bioRxiv · Oct 19, 2026 · PreprintGenomics

Phenotype-Guided In Silico Molecular Generation Using Large Language Models

Qun Jiang, Xing Ye, Zekun Guo, Yingce Xia, Zequn Liu, Jiaying Xu, Peiran Jin, Fusong Ju, Huanhuan Xia, Shangya Feng, Rui Jiang, Haiguang Liu, Tao Qin, Pan Deng, Sida Shao

GEMGen generates small molecules from transcriptomic data to phenocopy gene knockdown effects and identify novel inhibitors.

bioRxiv · Jan 5, 2026 · PreprintCell Biology