Author

Jingyun Liu

Duke University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Beile GaoiD· 1 shared Binbin CuiiD· 1 shared Bing WangiD· 1 shared Guangliang Wu· 1 shared Hongguang Han· 1 shared Lian‐Hui ZhangiD· 1 shared Liang YangiD· 1 shared Liangxiong Xu· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperMicrobiology

Beile GaoORCID

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2 papers

Recent·Most cited

Lense: Optimizing data preprocessing in single-cell omics using LLMs

Jingyun Liu, Zhicheng Ji

Lense optimizes single-cell omics preprocessing by using language models to select the best pipeline based on visual comparisons of low-dimensional representations.

bioRxiv · May 11, 2026 · PreprintBioinformatics

The long-chain fatty acid-CoA ligase FadD1 monitors Pseudomonas aeruginosa quorum sensing as a receptor of cis-2-decenoic acid

Shihao Song, Jingyun Liu, Bing Wang, Yang Si, Hongguang Han, Xiuyun Sun, Mingfang Wang, Binbin Cui, Guangliang Wu, Yongliang Huo, Liangxiong Xu, Beile Gao, Liang Yang, Xiaoxue Wang, Lian‐Hui Zhang, Yinyue Deng

This paper identifies FadD1 as a receptor for cis-DA quorum sensing in P. aeruginosa, showing it regulates virulence and physiology by binding cis-DA and modulating gene expression.

mLife · Dec 1, 2025Peer-reviewedMicrobiology