Author

John D Blischak

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 2 Genetics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Yoav GiladiD· 2 shared Amy Mitrano· 1 shared Anna Di Rienzo· 1 shared Chiaowen Hsiao· 1 shared David A Knowles· 1 shared David B Witonsky· 1 shared Jonathan E Burnett· 1 shared Jonathan K Pritchard· 1 shared

Activity by Year

2015-2017 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Yoav GiladORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Batch effects and the effective design of single-cell gene expression studies

Po-Yuan Tung, John D Blischak, Chiaowen Hsiao, David A Knowles, Jonathan E Burnett, Jonathan K Pritchard, Yoav Gilad

This study identifies genotype as the major source of variation in scRNA-seq data and highlights technical replicate variation, suggesting a framework for effective study design.

Scientific Reports · Jan 3, 2017Peer-reviewedGenomics

Mycobacterial infection induces a specific human innate immune response

John D Blischak, Ludovic Tailleux, Amy Mitrano, Luis B Barreiro, Yoav Gilad

The paper identifies genes specifically regulated by mycobacterial infection in macrophages, suggesting they may contribute to inter-individual susceptibility to tuberculosis.

Scientific Reports · Nov 20, 2015Peer-reviewedGenomics

Patterns of transcriptional response to 1,25-dihydroxyvitamin D3 and bacterial lipopolysaccharide in primary human monocytes

Silvia N Kariuki, John D Blischak, Shigeki Nakagome, David B Witonsky, Anna Di Rienzo

This study examines the transcriptional response of human monocytes to 1,25D and LPS, identifying gene expression patterns and pathways involved in immunomodulation and ethnic differences.

bioRxiv · Nov 6, 2015Genetics