Author

Joshua Bennett

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Synthetic Biology· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1 Organism:human· 1 Assay:protein sequence· 1 Assay:proteomics· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Abigail B. VenturaiD· 2 shared Andrea K. SteigeriD· 2 shared Christa Kohnert· 2 shared Hayley Carter· 2 shared Jahir M. GutierreziD· 2 shared John M. SuttoniD· 2 shared Joshua MeieriD· 2 shared Kerianne A. JacksoniD· 2 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersSynthetic Biology

Abigail B. VenturaORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Deep learning-based codon optimization with large-scale synonymous variant datasets enables generalized tunable protein expression

David A. Constant, Jahir M. Gutierrez, Anand V. Sastry, Rebecca Viazzo, Nicholas R. Smith, Jubair Hossain, David A. Spencer, Hayley Carter, Abigail B. Ventura, Michael T. M. Louie, Christa Kohnert, Rebecca Consbruck, Joshua Bennett, Kenneth A. Crawford, John M. Sutton, , Miles W. Gander

The paper develops deep learning models trained on synonymous variant datasets to predict and optimize protein expression in E. coli.

bioRxiv · Feb 11, 2023 · PreprintSynthetic Biology

Unlocking de novo antibody design with generative artificial intelligence

Amir Shanehsazzadeh, Matt McPartlon, George W. Kasun, Andrea K. Steiger, John M. Sutton, Edriss Yassine, Cailen M. McCloskey, Robel Gemechu Haile, Richard W. Shuai, Julian Alverio, Goran Rakočević, Simon Levine, Jovan Cejovic, Jahir M. Gutierrez, Alex Morehead, , Sharrol T. Bachas

Deep generative models combined with high-throughput screening design de novo anti-HER2 antibodies without further optimization, yielding nanomolar binders functionally comparable or superior to trastuzumab.

bioRxiv · Jan 8, 2023 · PreprintSynthetic Biology