Author

K. D. Makova

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Research Focus:differential expression· 2 Organism:human· 2 Organism:mouse· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

M. Tomaszkiewicz· 2 shared A. A. Zaidi· 1 shared A. G. Lucaci· 1 shared A. Nekrutenko· 1 shared A. Selberg· 1 shared B. Arbeithuber· 1 shared C. Liebowitz· 1 shared D. Callan· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersEvolutionary Biology

M. Tomaszkiewicz

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Author profile →

3 papers

Recent·Most cited

HyphAeon: Attention on Evolution Across Deep Time Transforms Comparative Genomics

S. L. Kosakovsky Pond, S. Weaver, D. Callan, J. D. Zehr, A. G. Lucaci, H. Verdonk, A. Selberg, G. Brown, M. Chikina, N. L. Clark, K. D. Makova, D. P. Martin, A. Nekrutenko

HyphAeon is a transformer model that accelerates detection of episodic diversifying selection in mammalian genomes and enables new analytical capabilities beyond traditional dN/dS methods.

bioRxiv · Sep 10, 2026 · PreprintBioinformatics

High satellite repeat turnover in great apes studied with short- and long-read technologies

M. Cechova, R. S. Harris, M. Tomaszkiewicz, B. Arbeithuber, F. Chiaromonte, K. D. Makova

The paper uses short- and long-read sequencing to study satellite repeat turnover in great apes, finding rapid repeat evolution and species-specific patterns.

bioRxiv · Mar 4, 2019Evolutionary Biology

Copy number variation of ampliconic genes across major human Y haplogroups

D. Ye, A. A. Zaidi, M. Tomaszkiewicz, C. Liebowitz, M. DeGiorgio, M. D. Shriver, K. D. Makova

The paper examines copy number variation of ampliconic genes across human Y haplogroups, finding high diversity and limited haplogroup-specific patterns.

bioRxiv · Dec 20, 2017Evolutionary Biology