Alignment Free Phylogeny Construction Using Maximum Likelihood Using k-mer Counts
A. T. M. M. Rahman, S. Habib, M. M. Islam, K. M. Rahman, A. Rahman
This paper introduces a model for k-mer frequency change based on a birth-death-migration process to estimate maximum likelihood phylogenies without sequence alignment.
bioRxiv · Dec 5, 2023 · PreprintEvolutionary Biology