Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
J. Hawkey, K. Paranagama, K. S. Baker, R. J. Bengtsson, F.-X. Weill, N. R. Thomson, S. Baker, L. Cerdeira, Z. Iqbal, M. Hunt, D. J. Ingle, T. J. Dallman, C. Jenkins, D. A. Williamson, K. E. Holt
The paper develops a genomic framework and genotyping scheme for Shigella sonnei to identify resistance determinants from WGS data, revealing common genotypes linked to antimicrobial resistance and global spread.
bioRxiv · Oct 29, 2020Microbiology