Author

D. J. Ingle

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:Bayesian inference· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

D. A. Williamson· 2 shared K. E. Holt· 2 shared T. J. Dallman· 2 shared B. Howden· 1 shared C. Jenkins· 1 shared F.-X. Weill· 1 shared H. Hartman· 1 shared J. Freedman· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersEvolutionary Biology

D. A. Williamson

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Author profile →

3 papers

Recent·Most cited

Quantifying plasmid movement in drug-resistant Shigella species using phylodynamic inference

N. F. Müller, R. R. Wick, L. M. Judd, D. A. Williamson, T. Bedford, B. Howden, S. Duchene, D. J. Ingle

This paper introduces a method to quantify plasmid movement in Shigella species over time, finding higher transfer rates for small plasmids and recent dissemination of a multidrug-resistant plasmid.

bioRxiv · Oct 27, 2022Evolutionary Biology

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

J. Hawkey, K. Paranagama, K. S. Baker, R. J. Bengtsson, F.-X. Weill, N. R. Thomson, S. Baker, L. Cerdeira, Z. Iqbal, M. Hunt, D. J. Ingle, T. J. Dallman, C. Jenkins, D. A. Williamson, K. E. Holt

The paper develops a genomic framework and genotyping scheme for Shigella sonnei to identify resistance determinants from WGS data, revealing common genotypes linked to antimicrobial resistance and global spread.

bioRxiv · Oct 29, 2020Microbiology

Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers

D. J. Ingle, S. Nair, H. Hartman, P. M. Ashton, Z. A. Dyson, M. Day, J. Freedman, M. A. Chattaway, K. E. Holt, T. J. Dallman

This study uses whole-genome sequencing of Salmonella Typhi isolates from travelers to analyze genotype distribution and antimicrobial resistance patterns across regions.

bioRxiv · Jan 3, 2019Microbiology