Author

Katie Krumholz

Cold Spring Harbor Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam C. SiepeliD· 1 shared Alexandra G. ChivuiD· 1 shared Amit BlumbergiD· 1 shared Charles G. DankoiD· 1 shared Edward J. Rice· 1 shared Noah DukleriD· 1 shared Yi-Fei HuangiD· 1 shared Yixin ZhaoiD· 1 shared

Activity by Year

2021-2021 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperGenomics

Adam C. SiepelORCID

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1 paper

Recent·Most cited

Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data

Amit Blumberg, Yixin Zhao, Yi-Fei Huang, Noah Dukler, Edward J. Rice, Alexandra G. Chivu, Katie Krumholz, Charles G. Danko, Adam C. Siepel

The paper introduces a method to estimate RNA half-lives using PRO-seq and RNA-seq data, finding correlations between RNA stability and splicing, miRNA binding, DNA methylation, and histone modifications.

BMC Biology · Feb 15, 2021Peer-reviewedGenomics