Author

Kelsey Beavers

Texas Advanced Computing Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Organism:fungi (other)· 1 Research Focus:gene regulatory network inference· 1 Research Focus:variant calling· 1 Organism:virus· 1

Frequent Co-Authors

Anton NekrutenkoiD· 2 shared Aysam GuerleriD· 2 shared Björn Andreas GrüningiD· 2 shared Dannon BakeriD· 2 shared Hiram ClawsoniD· 2 shared Marius van den BeekiD· 2 shared Maximilian HaeussleriD· 2 shared Scott CainiD· 2 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Anton NekrutenkoORCID

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2 papers

Recent·Most cited

Standardizing RNA-seq Analysis of Fungal Pathogens Using BRC-Analytics and Agentic AI: A Candidozyma auris Case Study

Anton Nekrutenko, Daniel E. Callan, Marius van den Beek, Dannon Baker, David O. Williams Rogers, Aysam Guerler, John M. Chilton, Hiram Clawson, Scott Cain, Teresa R. O’Meara, Kelsey Beavers, Michael C. Schatz, Maximilian Haeussler, Björn Andreas Grüning, Jeremy Goecks, Sergei L. Kosakovsky Pond

The paper demonstrates a framework using BRC-Analytics and agentic AI to standardize RNA-seq analysis of fungal pathogens, achieving reproducible results across studies with differing annotations.

bioRxiv · Dec 31, 2025 · PreprintGenomics

From data to publication in a browser with BRC-Analytics: Evolutionary dynamics of coding overlaps in measles virus

Anton Nekrutenko, Danielle Callan, Marius van den Beek, Dannon Baker, David John Rogers, Wolfgang Maier, Aysam Guerler, Hiram Clawson, Scott Cain, Kelsey Beavers, Maximilian Haeussler, Björn Andreas Grüning, Sergei L. Kosakovsky Pond

The paper introduces BRC-Analytics, a browser-based platform for pathogen genomics, demonstrating its use in analyzing measles virus evolutionary dynamics and revealing asymmetric frame evolution under selective pressures.

bioRxiv · Oct 13, 2025 · PreprintGenomics