Author

Keri Cavanaugh

University of California, Davis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 2 Genomics· 2

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 4 Approach:statistical model· 3 Research Focus:genome assembly· 2 Organism:Arabidopsis· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:GWAS / association mapping· 1 Organism:mouse· 1

Frequent Co-Authors

Richard W. MichelmoreiD· 4 shared Kyle FletcheriD· 3 shared Juliana GiliD· 2 shared Lien D. Bertier· 2 shared Rongkui HaniD· 2 shared Aubrey Kenefick· 1 shared Bob Beede· 1 shared Cayla Tsuchida· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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4 shared papersGenomics

Richard W. MichelmoreORCID

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4 papers

Recent·Most cited

The genome of the oomycete Peronosclerospora sorghi, a cosmopolitan pathogen of maize and sorghum, is inflated with dispersed pseudogenes

Kyle Fletcher, Frank N. Martin, Thomas Isakeit, Keri Cavanaugh, Clint Magill, Richard W. Michelmore

The paper characterizes the genome, transcriptome, and mitogenome of P. sorghi, revealing a large genome size and gene count due to retrotransposition and pseudogenization.

G3 Genes Genomes Genetics · Jan 2, 2023Peer-reviewedGenomics

Genome assembly and association tests identify interacting loci associated with vigor, precocity, and sex in interspecific pistachio rootstocks

William J. Palmer, Ewelina Jacygrad, Sagayamary Sagayaradj, Keri Cavanaugh, Rongkui Han, Lien D. Bertier, Bob Beede, Salih Kafkas, Deborah Golino, John E. Preece, Richard W. Michelmore

The paper identifies interacting genetic loci associated with tree size, sex, and precocity in pistachio rootstocks using genome assembly and association tests.

G3 Genes Genomes Genetics · Dec 1, 2022Peer-reviewedGenetics

AFLAP: Assembly-Free Linkage Analysis Pipeline using k-mers from whole genome sequencing data

Kyle Fletcher, Lin Zhang, Juliana Gil, Rongkui Han, Keri Cavanaugh, Richard W. Michelmore

AFLAP constructs high-density genetic maps and improves genome assemblies using k-mers from whole genome sequencing data without requiring a reference genome.

Genome biology · Apr 21, 2021Peer-reviewedGenetics

Genomic signatures of somatic hybrid vigor due to heterokaryosis in the oomycete pathogen, Bremia lactucae.

Kyle Fletcher, Juliana Gil, Lien D. Bertier, Aubrey Kenefick, Kelsey J. Wood, Lin Zhang, Sebastian Reyes-Chin-Wo, Keri Cavanaugh, Cayla Tsuchida, Joan Wong, Richard W. Michelmore

The paper reports a high-quality genome assembly of Bremia lactucae and identifies heterokaryosis as a source of somatic hybrid vigor in this oomycete pathogen.

Nature Communications · Jun 14, 2019Peer-reviewedGenomics