Author

Lara Boggeman

Salk Institute for Biological Studies

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Neuroscience· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Approach:statistical model· 4 Assay:DNA methylation· 3 Organism:mouse· 3 Research Focus:database / resource· 2 Assay:ATAC-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Anna BartlettiD· 4 shared Carolyn O’ConnoriD· 4 shared Hanqing LiuiD· 4 shared Jingtian ZhouiD· 4 shared Joseph R. EckeriD· 4 shared Joseph R. NeryiD· 4 shared Rosa CastanoniD· 4 shared Andrew I. AldridgeiD· 3 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersGenomics

Anna BartlettORCID

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Author profile →

4 papers

Recent·Most cited

Human Body Single-Cell Atlas of 3D Genome Organization and DNA Methylation

Jingtian Zhou, Yue Wu, Hanqing Liu, Wei Tian, Rosa Castanon, Anna Bartlett, Zuolong Zhang, Guocong Yao, Difang Shi, Ben Clock, Samantha Marcotte, Joseph R. Nery, Michelle Liem, Naomi Claffey, Lara Boggeman, , Joseph R. Ecker

The paper maps 3D genome organization and DNA methylation across 86,689 single nuclei from 16 human tissues, revealing cell-type-specific variations and discrepancies between methylation and chromatin structure.

Science · Jul 23, 2026Peer-reviewedGenomics

Brain-wide Correspondence Between Neuronal Epigenomics and Long-Distance Projections

Jingtian Zhou, Zhuzhu Zhang, May Wu, Hanqing Liu, Yan Pang, Anna Bartlett, Angeline C. Rivkin, Will N. Lagos, Elora Williams, Cheng-Ta Lee, Paula Assakura Miyazaki, Andrew I. Aldridge, Qiurui Zeng, J. L. Angelo Salinda, Naomi Claffey, , Edward M. Callaway

The paper links single-cell epigenomes and projection patterns of 33,034 mouse neurons to identify transcriptomic and epigenomic properties of projection cell types.

bioRxiv · May 1, 2023 · PreprintNeuroscience

DNA Methylation Atlas of the Mouse Brain at Single-Cell Resolution

Hanqing Liu, Jingtian Zhou, Wei Tian, Chongyuan Luo, Anna Bartlett, Andrew I. Aldridge, Jacinta D. Lucero, Julia K. Osteen, Joseph R. Nery, Huaming Chen, Angeline C. Rivkin, Rosa Castanon, Ben Clock, Yang Eric Li, Xiaomeng Hou, , Joseph R. Ecker

The paper constructs a DNA methylation atlas of the mouse brain at single-cell resolution, revealing epigenetic diversity and spatial organization of neuronal subtypes.

Nature · Oct 6, 2021Peer-reviewedGenomics

Epigenomic Diversity of Cortical Projection Neurons in the Mouse Brain

Zhuzhu Zhang, Jingtian Zhou, Pengcheng Tan, Yan Pang, Angeline C. Rivkin, Megan A. Kirchgessner, Elora Williams, Cheng-Ta Lee, Hanqing Liu, Alexis D. Franklin, Paula Assakura Miyazaki, Anna Bartlett, Andrew I. Aldridge, Minh Vu, Lara Boggeman, , Edward M. Callaway

The paper links epigenomic properties of cortical projection neurons to their anatomical and projection patterns using single-nucleus DNA methylation sequencing in mice.

Nature · Oct 6, 2021Peer-reviewedNeuroscience