Author

Linh Truong

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3 Cell Biology· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 3 Approach:statistical model· 3 Approach:experimental assay· 2 Organism:human· 2 Research Focus:batch correction / integration· 1 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1

Frequent Co-Authors

Huy NguyeniD· 3 shared Thao Truong· 3 shared Fred David MastiD· 1 shared Jean‐Claude FarréiD· 1 shared John D. AitchisoniD· 1 shared Leslie Rae MilleriD· 1 shared Maxwell Lewis NealiD· 1 shared Nandini ShuklaiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersBioinformatics

Huy NguyenORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

TOR and heat shock response pathways regulate peroxisome biogenesis during proteotoxic stress

Nandini Shukla, Maxwell Lewis Neal, Jean‐Claude Farré, Fred David Mast, Rajasri Sarkar, Linh Truong, Theresa Simon, Leslie Rae Miller, John D. Aitchison, Suresh Ellappa Subramani

This study shows that TOR and heat shock pathways regulate peroxisome biogenesis during proteotoxic stress in yeast and human cells.

Nature Communications · Nov 28, 2025Peer-reviewedCell Biology

OmnibusX: A unified platform for accessible multi-omics analysis

Linh Truong, Thao Truong, Huy Nguyen

OmnibusX provides a code-free, privacy-centric platform for multi-omics analysis by integrating diverse tools and workflows into a single application.

PLoS Computational Biology · Sep 8, 2025Peer-reviewedBioinformatics

Integrative analysis of single-cell gene expression: A comprehensive database approach

Linh Truong, Thao Truong, Huy Nguyen

The paper develops a database to integrate and analyze single-cell gene expression data, reducing computational demands and enabling pattern discovery across studies.

bioRxiv · Jul 23, 2024 · PreprintBioinformatics

Automated cell annotation in scRNA-seq data using unique marker gene sets

Linh Truong, Thao Truong, Huy Nguyen

This paper introduces a method for accurate cell type annotation in scRNA-seq data using curated marker gene sets and outperforms existing tools in subtype discrimination.

bioRxiv · May 24, 2024 · PreprintBioinformatics