Author

M. Benelli

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 3

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

F. Demichelis· 3 shared C. Biagioni· 2 shared D. Romagnoli· 2 shared G. M. Franceschini· 2 shared I. Migliaccio· 2 shared L. Malorni· 2 shared A. Augspach· 1 shared A. Di Leo· 1 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersCancer Biology

F. Demichelis

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Author profile →

3 papers

Recent·Most cited

Sensitive tumor detection, accurate quantification, and cancer subtype classification using low-pass whole methylome sequencing of plasma DNA

M. Paoli, F. Galardi, A. Nardone, C. Biagioni, D. Romagnoli, S. Di Donato, G. M. Franceschini, L. Livraghi, M. Pestrin, G. Sanna, E. Risi, I. Migliaccio, E. Moretti, L. Malorni, L. Biganzoli, , M. Benelli

This paper introduces METER, a computational tool that enables sensitive tumor detection, accurate quantification, and cancer subtype classification using low-pass whole methylome sequencing of plasma DNA.

bioRxiv · Jun 10, 2024 · PreprintCancer Biology

Role of Specialized mSWI/SNF Complexes in Prostate Cancer Lineage Plasticity

J. Cyrta, A. Augspach, M. R. de Filippo, D. Prandi, P. Thienger, M. Benelli, V. Cooley, R. Bareja, D. Wilkes, S.-S. Chae, P. Cavaliere, N. Dephoure, A.-C. Uldry, S. B. Lagache, S. Cohen, , M. Rubin

The paper investigates the role of mSWI/SNF complexes in NEPC lineage plasticity using patient data and cell models, finding deregulated subunits and SMARCA4 overexpression linked to aggressive disease.

Nature Communications · Nov 3, 2020Peer-reviewedCancer Biology

Cancer methylomes characterization enabled by Rocker-meth

M. Benelli, G. M. Franceschini, A. Magi, D. Romagnoli, C. Biagioni, I. Migliaccio, L. Malorni, A. Di Leo, F. Demichelis

Rocker-meth detects DMRs across 6,000 methylation profiles from 14 tumor types, revealing tumor-specific and shared DMRs and linking DNA hypermethylation to transcription factor deregulation.

bioRxiv · Oct 9, 2020 · PreprintCancer Biology