Author

M. Matthies

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 4

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Assay:DNA methylation· 1

Frequent Co-Authors

P. Sulc· 3 shared A. Walbrun· 1 shared C. Wang· 1 shared D. Satyabola· 1 shared D. Sukhareva· 1 shared E. Poppleton· 1 shared F. C. Simmel· 1 shared F. Zhang· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersBiophysics

P. Sulc

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4 papers

Recent·Most cited

Single-Molecule Force Spectroscopy of Toehold-Mediated Strand Displacement

A. Walbrun, T. Wang, M. Matthies, P. Sulc, F. C. Simmel, M. Rief

This study uses single-molecule force spectroscopy to analyze the kinetics of toehold-mediated strand displacement, revealing sequence-dependent dynamics and load effects in DNA and RNA interactions.

bioRxiv · Jan 16, 2024Biophysics

High-speed 3D DNA PAINT and unsupervised clustering for unlocking 3D DNA origami cryptography

G. B. M. Wisna, D. Sukhareva, J. Zhao, P. Chopade, D. Satyabola, M. Matthies, S. Roy, C. Wang, P. Sulc, H. Yan, R. F. Hariadi

This paper develops a DNA origami cryptography protocol using high-speed 3D DNA-PAINT and unsupervised clustering to enhance encryption key size and information retrieval accuracy.

bioRxiv · Aug 29, 2023 · PreprintBiophysics

Design, optimization, and analysis of large DNA and RNA nanostructures through interactive visualization, editing, and molecular simulation

E. Poppleton, J. Bohlin, M. Matthies, S. Sharma, F. Zhang, P. Sulc

The paper introduces oxView and open-source tools for visualizing and analyzing large DNA/RNA nanostructures simulated with oxDNA, enabling design, optimization, and structural analysis.

bioRxiv · Jan 24, 2020Biophysics

DNA-Encircled Lipid Bilayers

K. Iric, M. Subramanian, J. Oertel, N. P. Agarwal, M. Matthies, X. Periole, T. P. Sakmar, T. Huber, K. Fahmy, T.-L. Schmidt

This paper introduces DNA-encircled bilayers (DEBs) as a novel membrane-mimetic system for studying lipid phases and membrane proteins with precise control over size and functionalization.

bioRxiv · Jun 25, 2018Biophysics