Author

Manoj Itharajula

Nanyang Technological University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Research Focus:benchmarking· 2 Approach:deep learning· 2 Approach:large language model· 2 Organism:plant (other)· 2 Organism:Arabidopsis· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Marek MutwiliD· 3 shared Shan Chun Lim· 2 shared Emilia Emmanuelle Davey· 1 shared Guillaume ThibaultiD· 1 shared Herman Foo· 1 shared Jing Yang· 1 shared Kevin Fo· 1 shared Mads Harder Møller· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersBioinformatics

Marek MutwilORCID

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3 papers

Recent·Most cited

Research Process Graph: LLM-Driven Extraction and Hierarchical Organization of Research Logic

Jing Yang, Manoj Itharajula, Marek Mutwil

This paper creates a structured atlas of research logic in Plant Cell by converting articles into Research Process Graphs using LLMs, revealing patterns in research methods and findings.

bioRxiv · Jun 10, 2026 · PreprintPlant Biology

From Parametric Guessing to Graph-Grounded Answers: Building Reliable ChatGPT-like tools for Plant Science

Manoj Itharajula, Shan Chun Lim, Marek Mutwil

This paper evaluates LLMs for plant biology tasks, identifies their limitations, and proposes GraphRAG as a solution using structured knowledge graphs for reliable, reproducible answers.

bioRxiv · Apr 6, 2026 · PreprintBioinformatics

PlantConnectome: knowledge graph encompassing >70,000 plant articles

Shan Chun Lim, Manoj Itharajula, Mads Harder Møller, Rohan Shawn Sunil, Kevin Fo, Yu Song Chuah, Herman Foo, Emilia Emmanuelle Davey, Melissa J. Fullwood, Guillaume Thibault, Marek Mutwil

PlantConnectome extracts 5 million functional relationships from 71,000 plant biology abstracts using large language models and provides a database for gene-metabolite interactions and regulatory networks.

The Plant Cell · Jul 1, 2025Peer-reviewedBioinformatics