Author

Yu Song Chuah

Agency for Science, Technology and Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:large language model· 1 Organism:plant (other)· 1

Frequent Co-Authors

Chadi A. El FarraniD· 1 shared Chi-Hang Toh· 1 shared Emilia Emmanuelle Davey· 1 shared George Q. DaleyiD· 1 shared Guillaume ThibaultiD· 1 shared Herman Foo· 1 shared Hu LiiD· 1 shared James J. CollinsiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Chadi A. El FarranORCID

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2 papers

Recent·Most cited

BioinformaticsThe Plant CellPeer-reviewedJul 1, 2025

PlantConnectome: knowledge graph encompassing >70,000 plant articles

Shan Chun Lim, Manoj Itharajula, Mads Harder Møller…·Marek Mutwil

PlantConnectome extracts 5 million functional relationships from 71,000 plant biology abstracts using large language models and provides a database for gene-metabolite interactions and regulatory networks.

22 citationstop 2%

plant (other)large language model

𝕏 PostBluesky

GenomicsScience AdvancesPeer-reviewedSep 11, 2020

Diversification of Reprogramming Trajectories Revealed by Parallel Single-cell Transcriptome and Chromatin Accessibility Sequencing

Qiao Rui Xing, Chadi A. El Farran, Pradeep Gautam…·Yuin‐Han Loh

This study uses scRNA-Seq and scATAC-Seq to show that human reprogramming occurs through asynchronous, diverse trajectories with distinct regulatory networks.

51 citations

humanscRNA-seq

𝕏 PostBluesky