Author

Emilia Emmanuelle Davey

Nanyang Technological University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Organism:C. elegans· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Marek MutwiliD· 3 shared Guillaume ThibaultiD· 2 shared Herman Foo· 2 shared Aloysius Jun Hui QuekiD· 1 shared An-Nikol Kutevska· 1 shared Bronson Lee· 1 shared Chin Yong LimiD· 1 shared Edbert Edric Rodrigues· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersBioinformatics

Marek MutwilORCID

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3 papers

Recent·Most cited

BioinformaticsThe Plant CellPeer-reviewedJul 1, 2025

PlantConnectome: knowledge graph encompassing >70,000 plant articles

Shan Chun Lim, Manoj Itharajula, Mads Harder Møller…·Marek Mutwil

PlantConnectome extracts 5 million functional relationships from 71,000 plant biology abstracts using large language models and provides a database for gene-metabolite interactions and regulatory networks.

22 citationstop 2%

plant (other)large language model

𝕏 PostBluesky

BioinformaticsBMC GenomicsPeer-reviewedNov 13, 2024

Harnessing full-text publications for deep insights into C. elegans and Drosophila connectomes

Karthick Raja Arulprakasam, Janelle Wing Shan Toh, Herman Foo…·Guillaume Thibault

The paper extracts and analyzes connectivity information from publications to build searchable connectomes for C. elegans and Drosophila using AI and bioinformatics tools.

4 citations

C. elegansDrosophila

𝕏 PostBluesky

BioinformaticsJournal of Molecular BiologyPeer-reviewedNov 25, 2021

Bacteria.guru: comparative transcriptomics and co-expression database for bacterial pathogens

Peng Ken Lim, Emilia Emmanuelle Davey, Sean Wee…·Marek Mutwil

Bacteria.guru provides a database for comparative transcriptomics and co-expression networks of bacterial pathogens to aid in understanding gene function and antibiotic resistance.

10 citations

bacteria (other)bulk RNA-seq

𝕏 PostBluesky