Author

Marissa E. Di

University of Florida

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

Panayiotis V. BenosiD· 2 shared Eleanor ValenziiD· 1 shared Gavin E. ArteeliD· 1 shared Haiyi Harry MaoiD· 1 shared Harinder SinghiD· 1 shared Jia-Jun LiuiD· 1 shared Josepmaria ArgemíiD· 1 shared Juliane I. BeieriD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersSystems Biology

Panayiotis V. BenosORCID

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2 papers

Recent·Most cited

Alpha diversity analysis of hepatic transcriptome reveals novel pathways inalcohol-related hepatitis

Sudrishti Chaudhary, Jia-Jun Liu, Silvia Liu, Marissa E. Di, Juliane I. Beier, Ramon A. Bataller, Josepmaria Argemí, Panayiotis V. Benos, Gavin E. Arteel

The paper analyzes transcriptome diversity in alcohol-related liver disease to identify novel pathways and genes not detected by differential expression analysis.

bioRxiv · Oct 8, 2025 · PreprintSystems Biology

HALO: Hierarchical Causal Modeling for Single Cell Multi-Omics Data

Haiyi Harry Mao, Minxue Jia, Marissa E. Di, Eleanor Valenzi, Xiaoyu Tracy Cai, Harinder Singh, Robert Lafyatis, Kun Zhang, Panayiotis V. Benos

HALO models temporal causal relations in single-cell multi-omics data by distinguishing coupled and decoupled latent representations, revealing lineage specification dynamics in AT2 cells.

Nature Communications · Oct 7, 2025Peer-reviewedBioinformatics