Author

Marko Järvenpää

Harvard University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:Bayesian inference· 2 Organism:bacteria (other)· 1 Organism:plant (other)· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Georgia LagoudasiD· 1 shared Ilya S. PotapoviD· 1 shared James A. McKinnell· 1 shared Loren Gregory MilleriD· 1 shared M. KaasalaineniD· 1 shared Markku ÅkerblomiD· 1 shared Mohamad SateriD· 1 shared Pasi RaumoneniD· 1 shared

Activity by Year

2017-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Georgia LagoudasORCID

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2 papers

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedApr 22, 2019

A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation

Marko Järvenpää, Mohamad Sater, Georgia Lagoudas…·Pekka Marttinen

The paper presents a Bayesian model to estimate bacterial acquisition and clearance rates by accounting for within-host genetic variation and sampling intervals, validated using simulations and applied to MRSA isolates.

11 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

Systems BiologyGigaSciencePeer-reviewedAug 19, 2017

A generator of morphological clones for plant species

Ilya S. Potapov, Marko Järvenpää, Markku Åkerblom…·M. Kaasalainen

The paper introduces an algorithm to generate morphological tree clones using stochastic growth models and experimental tree data, producing realistic tree forms with both coarse and fine-scale similarities.

7 citations

plant (other)statistical model

𝕏 PostBluesky