Author

Megan Hanna

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Chet Birger· 2 shared Adam Novak· 1 shared Alden D. Deran· 1 shared Alexander Baumann· 1 shared Anthony D. JosephiD· 1 shared Anthony PhilippakisiD· 1 shared Arjun Rao· 1 shared Audrey Musselman-Brown· 1 shared

Activity by Year

2016-2017 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Chet Birger

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2 papers

Recent·Most cited

FireCloud, a scalable cloud-based platform for collaborative genome analysis: Strategies for reducing and controlling costs

Chet Birger, Megan Hanna, Edward A. Salinas, Jason Neff, Gordon Saksena, Dimitri G. Livitz, Daniel Rosebrock, Chip Stewart, Ignaty Leshchiner, Alexander Baumann, Douglas Voet, Kristian Cibulskis, Eric Banks, Anthony Philippakis, Gad A. Getz

Four levers for cheaper cloud genomics on FireCloud: size virtual disks dynamically, tune VM provisioning from monitoring data, buy preemptible machines, and parallelise tasks at the right width.

bioRxiv · Nov 3, 2017 · PreprintBioinformatics

Rapid and efficient analysis of 20,000 RNA-seq samples with Toil

John Vivian, Arjun Rao, Frank Austin Nothaft, Christopher Ketchum, Joel Armstrong, Adam Novak, Jacob Pfeil, Jake Narkizian, Alden D. Deran, Audrey Musselman-Brown, Hannes Schmidt, Peter Amstutz, Brian Craft, Mary Goldman, Kate Rosenbloom, , Benedict Paten

The paper demonstrates Toil's ability to efficiently process 20,000 RNA-seq samples to create a batch-effect-free meta-analysis across five datasets.

bioRxiv · Jul 7, 2016Bioinformatics