Author
University of California, Santa CruzORCID 0000-0002-4778-7723Unclaimed ORCID profile · follow to get notified of new preprints
3 papers
Recent·Most cited
Holly C. Beale, Jacquelyn M. Roger, Matthew A. Cattle…·Olena M. Vaske
The paper evaluates the informativeness of reads in bulk RNA-Seq datasets and recommends using MEND reads for accurate gene expression quantification in pediatric cancer studies.
John Vivian, Jordan M. Eizenga, Holly C. Beale…·Benedict Paten
This paper introduces a Bayesian framework to detect gene expression outliers in single samples by creating a consensus background distribution without requiring a manual comparison set.
John Vivian, Arjun Rao, Frank Austin Nothaft…·Benedict Paten
The paper demonstrates Toil's ability to efficiently process 20,000 RNA-seq samples to create a batch-effect-free meta-analysis across five datasets.