Author

Mengdie Ji

Chinese Academy of Medical Sciences & Peking Union Medical College

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1

Frequent Co-Authors

Chun Li· 1 shared Haiyan GongiD· 1 shared Minghong LiiD· 1 shared Sichen Zhang· 1 shared Xiaotong ZhangiD· 1 shared Yang CheniD· 1 shared Yi Yang· 1 shared Zan YuaniD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

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8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Chun Li

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1 paper

Recent·Most cited

MINE is a method for detecting spatial density of regulatory chromatin interactions based on a MultI-modal NEtwork

Haiyan Gong, Minghong Li, Mengdie Ji, Xiaotong Zhang, Zan Yuan, Sichen Zhang, Yi Yang, Chun Li, Yang Chen

The paper introduces MINE, a toolkit to detect and analyze spatial density of regulatory chromatin interactions using Hi-C, ATAC-seq, and histone ChIP-seq data.

Cell Reports Methods · Jan 1, 2023Peer-reviewedBioinformatics