Author

Mingli Ye

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:scRNA-seq· 3 Research Focus:cell type annotation· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Renke YouiD· 3 shared Xuegong ZhangiD· 3 shared Amin Chen· 2 shared Jiaqi LiiD· 2 shared Wenrui LiiD· 2 shared Chen LiiD· 1 shared Dingli Zhou· 1 shared Fanhong LiiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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3 shared papersBioinformatics

Renke YouORCID

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3 papers

Recent·Most cited

uniLIVER: a Human Liver Cell Atlas for Data-Driven Cellular State Mapping

Yanhong Wu, Yuhan Fan, Yuxin Miao, Yuman Li, Guifang Du, Zeyu Chen, Jinmei Diao, Yu-Ann Chen, Mingli Ye, Renke You, Amin Chen, Yixin Chen, Wenrui Li, Wenbo Guo, Jiahong Dong, , Jin Gu

uniLIVER creates a human liver cell atlas using sc/snRNA-seq data and develops LiverCT to map abnormal datasets to the reference atlas, revealing changes in cell type composition and states in liver cancer.

Journal of genetics and genomics/Journal of Genetics and Genomics · Jan 30, 2025Peer-reviewedBioinformatics

A universal single-cell transcriptomics atlas of human lung decodes multiple pulmonary diseases

Fanjie Wu, Wenhao Cai, Hai C. Tang, Shikang Zheng, Haiyue Zhang, Yixin Chen, Yutong Han, Dingli Zhou, Ruihan Wang, Mingli Ye, Renke You, Amin Chen, Jiaqi Li, Xuegong Zhang, Weizhong Li

The paper presents uniLUNG, a large single-cell transcriptomic atlas of the human lung, identifying new cell types and subpopulations associated with lung diseases.

bioRxiv · Dec 17, 2024 · PreprintBioinformatics

hECA: the cell-centric assembly of a cell atlas

Sijie Chen, Yanting Luo, Haoxiang Gao, Fanhong Li, Yixin Chen, Jiaqi Li, Renke You, Minsheng Hao, Haiyang Bian, Xi Xi, Wenrui Li, Weiyu Li, Mingli Ye, Qiuchen Meng, Ziheng Zou, , Xuegong Zhang

The paper introduces hECA, a cell-centric human Ensemble Cell Atlas, which integrates scRNA-seq data from multiple studies to enable targeted data retrieval, multi-view presentations, and customizable reference creation for cell type annotations.

iScience · Apr 28, 2022Peer-reviewedBioinformatics