Wenrui Li

uniLIVER creates a human liver cell atlas using sc/snRNA-seq data and develops LiverCT to map abnormal datasets to the reference atlas, revealing changes in cell type composition and states in liver cancer.

stMMR identifies spatial domains from multi-modal spatial transcriptomics data using geometric deep learning, showing improved performance in domain identification and gene discovery across biological contexts.

The paper introduces hECA, a cell-centric human Ensemble Cell Atlas, which integrates scRNA-seq data from multiple studies to enable targeted data retrieval, multi-view presentations, and customizable reference creation for cell type annotations.