Author

Muskan Pandey

University of Basel

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1 Research Focus:protein structure prediction· 1 Assay:Ribo-seq· 1

Frequent Co-Authors

Asier GonzáleziD· 2 shared Mihaela ZavolaniD· 2 shared Niels SchlusseriD· 2 shared Aleksei MironoviD· 1 shared Alexander SchmidtiD· 1 shared Mairene Coto‐LlerenaiD· 1 shared Meriç AtamaniD· 1 shared Nitish MittaliD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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2 shared papersSystems Biology

Asier GonzálezORCID

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2 papers

Recent·Most cited

Ribosome profiling reveals extensive translational alterations in steatohepatitis-associated hepatocellular carcinoma

Asier González, Meriç Ataman, Aleksei Mironov, Niels Schlusser, Muskan Pandey, Alexander Schmidt, Mairene Coto‐Llerena, Salvatore Piscuoglio, Nitish Mittal, Mihaela Zavolan

This study uses ribosome profiling to show that steatohepatitis-associated HCC has extensive translational alterations affecting hundreds of genes and revealing novel translated regions.

bioRxiv · Feb 12, 2026 · PreprintSystems Biology

Current limitations in predicting mRNA translation with deep learning models

Niels Schlusser, Asier González, Muskan Pandey, Mihaela Zavolan

This study evaluates deep learning models' ability to predict mRNA translation from 5UTR sequences, finding poor generalization to endogenous mRNAs compared to reporter constructs.

Genome biology · Aug 20, 2024Peer-reviewedBioinformatics