Author

N. Charbonnel

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 7 Evolutionary Biology· 3 Microbiology· 3

Signature Assays, Organisms & Methods

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Organism:mouse· 11 Approach:experimental assay· 9 Research Focus:host-pathogen & immune response· 6 Assay:metagenomics· 6 Research Focus:ecology & biodiversity· 4 Approach:statistical model· 4 Research Focus:cell type annotation· 2 Assay:DNA methylation· 2

Frequent Co-Authors

M. Galan· 10 shared A. Loiseau· 6 shared G. Castel· 5 shared M. Bouilloud· 4 shared P. Marianneau· 4 shared S. Piry· 4 shared C. Tatard· 3 shared D. Pontier· 3 shared

Activity by Year

2017-2023 · peak 5/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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10 shared papersEcology

M. Galan

Mutual co-authors in cluster

Author profile →

13 papers

Recent·Most cited

Effects of forest urbanization on the interplay between small mammal communities and their gut microbiota

M. Bouilloud, M. Galan, J. Pradel, A. Loiseau, J. FERRERO, R. Gallet, B. Roche, N. Charbonnel

This study examines how urbanization affects small mammal communities and their gut microbiota, finding that urban species show reduced taxonomic diversity but increased functional diversity in their microbiota.

bioRxiv · Sep 7, 2023 · PreprintEcology

Evolution and Genetic Characterization of Seoul Virus in Wild Rats Rattus Norvegicus from an urban park in Lyon, France 2020-2022

H. Alburkat, t. smura, M. Bouilloud, J. Pradel, G. ANFRAY, k. berthier, L. Dutra, A. loiseau, T. Niamsap, V. Olander, d. sepulveda, V. Venkat, N. Charbonnel, G. Castel, T. Sironen

The paper characterizes Seoul virus in wild rats in Lyon, finding high genetic similarity to a 2013 strain and low population structuring, recommending city-wide surveillance.

bioRxiv · Apr 12, 2023 · PreprintMicrobiology

Serological surveillance for wild rodent infection with SARS-CoV-2 in Europe

V. Bourret, L. Dutra, H. Alburkat, S. Maki, E. Lintunen, M. Wasniewski, R. Kant, M. Grzybek, V. Venkat, H. Asad, J. Pradel, M. Bouilloud, H. Leirs, V. C. Colombo, V. Sluydts, , T. Sironen

The paper reports serological testing of 1,237 wild rodents and other small mammals across Europe for SARS-CoV-2 exposure, finding all samples negative except one.

bioRxiv · Aug 2, 2022 · PreprintMicrobiology

Three-way relationships between gut microbiota, helminth assemblages and bacterial infections in wild rodent populations

M. Bouilloud, M. Galan, A. Dubois, C. Diagne, P. Marianneau, B. Roche, N. Charbonnel

This study examines the three-way interactions between gut microbiota, helminth assemblages, and bacterial infections in wild bank voles, finding geographic and compositional variations influenced by environmental and parasitic factors.

bioRxiv · May 23, 2022Ecology

How bank vole-PUUV interactions influence the eco-evolutionary processes driving nephropathia epidemica epidemiology: An experimental and genomic approach.

S. Madrieres, C. Tatard, S. Murri, J. VULIN, M. Galan, S. Piry, C. Pulido, A. Loiseau, E. Artige, L. Benoit, N. Lemenager, L. Lakhdar, N. Charbonnel, P. Marianneau, G. Castel

This study investigates how bank vole-PUUV interactions influence the epidemiology of nephropathia epidemica by analyzing viral infection dynamics and genetic differences in French endemic and non-endemic areas.

bioRxiv · Aug 28, 2020Evolutionary Biology

First isolation and genetic characterization of Puumala orthohantavirus strains from France

J. Vulin, S. Murri, S. Madrieres, M. Galan, C. Tatard, S. Piry, G. Vaccari, C. D'agostino, N. Charbonnel, G. Castel, P. Marianneau

This study isolates and genetically characterizes two Puumala orthohantavirus strains from France, revealing differences in viral sequences between tissue and cell culture samples.

bioRxiv · Aug 27, 2020Microbiology

eDNA metabarcoding reveals a core and secondary diets of the greater horseshoe bat with strong spatio-temporal plasticity

O. Tournayre, M. Leuchtmann, M. Galan, M. Trillat, S. Piry, D. Pinaud, O. Filippi-Codaccioni, D. Pontier, N. Charbonnel

This study uses eDNA metabarcoding to analyze the diet of greater horseshoe bats, revealing a core and secondary diet with strong spatio-temporal variation.

bioRxiv · Jun 8, 2020Ecology

Pathogen community composition and co-infection patterns in a wild community of rodents

J. L. Abbate, M. Galan, M. Razzauti, T. Sironen, L. Voutilainen, H. Henttonen, P. Gasqui, J.-F. Cosson, N. Charbonnel

The paper examines pathogen diversity and co-infection patterns in wild rodent populations, finding host species as the main driver of pathogen community structure and host-specific pathogen associations.

bioRxiv · Feb 9, 2020Ecology

Antagonistic pathogen-mediated selection favours the maintenance of innate immune gene polymorphism in a widespread wild ungulate

E. Quemere, P. Hessenauer, M. Galan, M. Fernandez, J. Merlet, Y. Chaval, A. J. M. Hewison, N. Morellet, H. Verheyden, E. Gilot Fromont, N. Charbonnel

The study investigates how pathogen-mediated selection maintains innate immune gene polymorphism in roe deer, finding antagonistic effects of Toxoplasma and Chlamydia on Tlr2 polymorphism.

bioRxiv · Jan 24, 2020 · PreprintEvolutionary Biology

Integrating population genetics to define conservation units from the core to the edge of Rhinolophus ferrumequinum western range

O. Tournayre, J.-B. Pons, M. Leuchtmann, R. Leblois, S. Piry, O. Filippi-Codaccioni, A. Loiseau, J. Duhayer, I. Garin, F. Mathews, S. Puechmaille, N. Charbonnel, D. Pontier

This study uses microsatellite markers to analyze genetic diversity and structure in Rhinolophus ferrumequinum populations across Western Europe, identifying barriers to dispersal and suggesting management units.

bioRxiv · Jun 7, 2019Evolutionary Biology

Differential immune gene expression associated with contemporary range expansion of two invasive rodents in Senegal

N. Charbonnel, M. Galan, C. Tatard, A. Loiseau, C. A. Diagne, A. Dalecky, H. Parrinello, S. Rialle, D. Severac, C. Brouat

The paper compares gene expression in ancient and recently invaded populations of two rodents in Senegal, finding immune-related gene overexpression in mice but not rats.

bioRxiv · Feb 19, 2019Ecology

Metabarcoding for the parallel identification of several hundred predators and their preys: application to bat species diet analysis

M. Galan, J.-B. Pons, O. Tournayre, E. Pierre, M. Leuchtmann, D. Pontier, N. Charbonnel

This paper develops a metabarcoding approach to identify bat species and their arthropod prey from fecal samples, improving taxonomic resolution and reducing false positives through controls and replicates.

bioRxiv · Nov 28, 2017Ecology

Bank Vole Immunoheterogeneity May Limit Nephropatia Epidemica Emergence In A French Non-Endemic Region

A. Dubois, G. Castel, S. Murri, C. Pulido, J.-B. Pons, L. Benoit, A. Loiseau, L. Lakhdar, M. Galan, P. Marianneau, N. Charbonnel

The paper investigates whether immunoheterogeneity in bank voles limits the emergence of nephropathia epidemica in a French non-endemic region.

Parasitology · Sep 21, 2017Peer-reviewedEcology