Author

N. Noyes

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Ecology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Approach:statistical model· 4 Organism:bacteria (other)· 2 Organism:chicken / avian· 2 Research Focus:host-pathogen & immune response· 2 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

C. J. Dean· 3 shared F. Pena-Mosca· 3 shared L. S. Caixeta· 3 shared P. Pinedo· 2 shared S. M. Godden· 2 shared T. J. Wehri· 2 shared T. Ray· 2 shared A. Agarwal· 1 shared

Activity by Year

2017-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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3 shared papersMicrobiology

C. J. Dean

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Exploring the phylogenetic diversity and antimicrobial activity of non-aureus staphylococci and mammaliicocci isolated from teat apices of organic dairy cows

F. Pena-Mosca, T. N. Gaire, C. J. Dean, P. Ferm, D. Manriquez, P. Pinedo, N. Noyes, L. S. Caixeta

The paper investigates NASM species in organic dairy cows, their antimicrobial activity against mastitis pathogens, and associations with udder health outcomes.

bioRxiv · Feb 1, 2024Microbiology

The impact of kit, environment and sampling contamination on the observed microbiome of bovine milk

C. J. Dean, Y. Deng, T. J. Wehri, T. Ray, F. Pena-Mosca, B. A. Crooker, S. M. Godden, L. S. Caixeta, N. Noyes

This study shows that most sequence data from bovine milk samples are contaminated, with contaminants mainly from DNA kits and teat surfaces, and highlights the need for rigorous decontamination.

bioRxiv · Nov 7, 2023Microbiology

Exploring associations between the teat apex metagenome and Staphylococcus aureus intramammary infection risk in primiparous cows under organic directives

C. J. Dean, F. Pena-Mosca, T. Ray, T. J. Wehri, K. Sharpe, A. Antunes, E. Doster, L. Fernandes, V. F. Calles, C. Bauman, S. M. Godden, B. Heins, P. Pinedo, V. S. Machado, L. S. Caixeta, N. Noyes

This study identifies associations between teat apex microbiome and Staphylococcus aureus intramammary infection risk in primiparous cows using shotgun metagenomics and culture-based data.

bioRxiv · Sep 12, 2023 · PreprintEcology

Advancing antimicrobial resistance monitoring in surface waters with metagenomic and quasimetagenomic methods

A. Ottesen, B. Kocurek, P. Ramachandran, E. Reed, S. Commichaux, G. Engelbach, M. Mammel, S. Saint Fleurant, S. Zhao, C. Kabera, A. Merrill, N. Bonin, H. Worley, N. Noyes, C. Boucher, , E. Strain

This study compares metagenomic and quasimetagenomic methods to detect antimicrobial resistance genes in surface waters, showing quasimetagenomic data identifies significantly more resistance determinants.

bioRxiv · Apr 22, 2022Microbiology

Integrative and Conjugative Elements (ICE) and Associated Cargo Genes within and across Hundreds of Bacterial Genera

J. Kaufman, I. Terrizzano, G. Nayar, E. Seabolt, A. Agarwal, I. B. Slizovskiy, N. Noyes

The paper analyzes ICE and associated cargo genes across 200,000 bacterial genomes, finding ICE genomes are common and linked to AMR gene spread and phenotypic resistance.

bioRxiv · Apr 7, 2020 · PreprintMicrobiology

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis

N. Noyes, K.-C. Cho, J. Ravel, L. Forney, Z. Abdo

This study uses Bayesian network analysis to uncover associations between sexual habits, menstrual hygiene practices, demographics, and the vaginal microbiome, revealing new connections and limitations of current analytical methods.

bioRxiv · Nov 6, 2017Microbiology