Author

Nick Carriero

Flatiron Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 1 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

Richard BonneauiD· 2 shared Aaron WattersiD· 1 shared Andras PatakiiD· 1 shared Aviv MadariD· 1 shared Bryn C. TayloriD· 1 shared Chris ChandleriD· 1 shared Dan R. LittmaniD· 1 shared Daniel BerenbergiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Richard BonneauORCID

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2 papers

Recent·Most cited

Sequence-structure-function relationships in the microbial protein universe

Julia Koehler Leman, Paweł Szczerbiak, P. Douglas Renfrew, Vladimir Gligorijević, Daniel Berenberg, Tommi Vatanen, Bryn C. Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, I. Fisk, Ramnik J. Xavier, Rob D. Knight, Richard Bonneau, Tomasz Kościółek

The paper predicts structures and annotates functions for diverse microbial protein sequences, identifying novel folds and highlighting the saturation of structural space.

bioRxiv · Mar 18, 2022 · PreprintBioinformatics

Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells

Emily R. Miraldi, Maria V. Pokrovskii, Aaron Watters, Dayanne M. Castro, Nicholas De Veaux, Jason A. Hall, June‐Yong Lee, Maria Ciofani, Aviv Madar, Nick Carriero, Dan R. Littman, Richard Bonneau

The paper develops methods to infer transcriptional regulatory networks in Th17 cells using ATAC-seq and RNA-seq data, revealing new roles for transcription factors and their modules.

Genome Research · Mar 1, 2019Peer-reviewedSystems Biology