Author

Noah Shepard

Allen Institute for Brain Science

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:mouse· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Carol L. ThompsoniD· 2 shared Changkyu LeeiD· 2 shared Elysha FiabaneiD· 2 shared Jack WatersiD· 2 shared Lane SawyeriD· 2 shared Lydia NgiD· 2 shared Michael HawrylycziD· 2 shared Scott F. DanieliD· 2 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Carol L. ThompsonORCID

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Author profile →

2 papers

Recent·Most cited

MapMyCells: High-performance mapping of unlabeled cell-by-gene data to reference brain taxonomies

Scott F. Daniel, Changkyu Lee, Tyler S. Mollenkopf, M. H. Lee, Joel Arbuckle, Elysha Fiabane, Mariano I. Gabitto, Nelson Johansen, Inkar Kapen, Andrew W. Kraft, Jane Lai, Su Ying Li, Ryan McGinty, Jeremy A. Miller, Skyler Moosman, , Michael Hawrylycz

MapMyCells maps unlabeled single-cell datasets to reference brain taxonomies, enabling cross-study integration and reproducible cell-type annotation.

bioRxiv · Mar 9, 2026 · PreprintBioinformatics

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain

Zizhen Yao, Cindy T. J. van Velthoven, Michael Kunst, Meng Zhang, Delissa McMillen, Changkyu Lee, Won Jung, Jeff Goldy, Aliya Abdelhak, Matthew Aitken, Katherine S. Baker, Pamela M. Baker, Eliza R. Barkan, Darren Bertagnolli, Ashwin A. Bhandiwad, , Xiaowei Zhuang

This paper creates a high-resolution transcriptomic and spatial cell type atlas of the whole adult mouse brain, revealing spatial organization and transcription factor codes for cell types.

Nature · Dec 13, 2023Peer-reviewedNeuroscience