Author

Skyler Moosman

Allen Institute for Brain ScienceORCID 0009-0007-0734-9554Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Organism:mouse· 4 Approach:experimental assay· 3 Research Focus:database / resource· 2 Organism:human· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2

Frequent Co-Authors

Scott F. DanieliD· 4 shared Sven OttoiD· 4 shared Anish Bhaswanth ChakkaiD· 3 shared Cameron BielsteiniD· 3 shared Changkyu LeeiD· 3 shared Darren BertagnolliiD· 3 shared Jeff GoldyiD· 3 shared Jocelin MaloneiD· 3 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersNeuroscience

Scott F. DanielORCID

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Author profile →

4 papers

Recent·Most cited

MapMyCells: High-performance mapping of unlabeled cell-by-gene data to reference brain taxonomies

Scott F. Daniel, Changkyu Lee, Tyler S. Mollenkopf, M. H. Lee, Joel Arbuckle, Elysha Fiabane, Mariano I. Gabitto, Nelson Johansen, Inkar Kapen, Andrew W. Kraft, Jane Lai, Su Ying Li, Ryan McGinty, Jeremy A. Miller, Skyler Moosman, , Michael Hawrylycz

MapMyCells maps unlabeled single-cell datasets to reference brain taxonomies, enabling cross-study integration and reproducible cell-type annotation.

bioRxiv · Mar 9, 2026 · PreprintBioinformatics

Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits

Avery C. Hunker, Morgan E. Wirthlin, Gursajan Gill, Nelson Johansen, Marcus J. Hooper, Victoria Omstead, Sara Vargas, M. Nathaly Lerma, Naz Taskin, Natalie Weed, Will Laird, Yemeserach M. Bishaw, Jacqueline L. Bendrick, Bryan B. Gore, Yoav Ben‐Simon, , Kara Ronellenfitch

The paper presents an enhancer AAV toolbox for targeting and perturbing striatal cell types and circuits in mice, with validated specificity and cross-species applicability.

Neuron · May 1, 2025Peer-reviewedNeuroscience

A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types

Yoav Ben‐Simon, Marcus J. Hooper, Sujatha Narayan, Tanya L. Daigle, Deepanjali Dwivedi, Sharon W. Way, Aaron Oster, David A. Stafford, John K. Mich, Michael J. Taormina, Refugio A. Martinez, Ximena Opitz-Araya, Jada R. Roth, Jason R. Alexander, Shona W. Allen, , Shea T. Ransford

The paper develops a toolkit of transgenic mouse lines and enhancer AAVs for selective targeting of cortical cell populations using transcriptomic and epigenomic data.

Cell · May 1, 2025Peer-reviewedNeuroscience

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain

Zizhen Yao, Cindy T. J. van Velthoven, Michael Kunst, Meng Zhang, Delissa McMillen, Changkyu Lee, Won Jung, Jeff Goldy, Aliya Abdelhak, Matthew Aitken, Katherine S. Baker, Pamela M. Baker, Eliza R. Barkan, Darren Bertagnolli, Ashwin A. Bhandiwad, , Xiaowei Zhuang

This paper creates a high-resolution transcriptomic and spatial cell type atlas of the whole adult mouse brain, revealing spatial organization and transcription factor codes for cell types.

Nature · Dec 13, 2023Peer-reviewedNeuroscience