Author

O. Ebenhoeh

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 4 Bioengineering· 2 Biochemistry· 1 Biophysics· 1 Ecology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 8 Assay:DNA methylation· 2 Assay:metabolomics· 2 Organism:plant (other)· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Organism:C. elegans· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

M. van Aalst· 2 shared N. P. Saadat· 2 shared O. Popa· 2 shared S. E. Wilken· 2 shared A. B. Matuszynska· 1 shared A. Behle· 1 shared A. Brand· 1 shared A. F. Tissier· 1 shared

Activity by Year

2017-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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2 shared papersPlant Biology

M. van Aalst

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Author profile →

10 papers

Recent·Most cited

A mathematical model of photoinhibition: exploring the impact of quenching processes

T. Nies, S. Matsubara, O. Ebenhoeh

The paper presents a mathematical model of photoinhibition that incorporates quenching processes and PETC dynamics to better understand and quantify the effects of high light on photosynthetic efficiency.

bioRxiv · Sep 12, 2023Plant Biology

Sea-ice melt determines seasonal phytoplankton dynamics and delimits the habitat of temperate Atlantic taxa as the Arctic Ocean atlantifies

E. Oldenburg, O. Popa, M. Wietz, W.-J. von Appen, S. Torres-Valdes, C. Bienhold, O. Ebenhoeh, K. Metfies

This study examines how sea-ice melt affects phytoplankton dynamics and species distribution in the Arctic Ocean over two years at two mooring sites.

bioRxiv · May 4, 2023Ecology

Approximating carbon fixation - how important is the Calvin-Benson cycle steady-state assumption?

M. van Aalst, O. Ebenhoeh, B. J. Walker

The paper evaluates the validity of assuming a steady-state for the Calvin-Benson cycle in photosynthesis models by simplifying an existing model.

bioRxiv · Nov 18, 2022 · PreprintPlant Biology

Growth Mechanics: General principles of optimal cellular resource allocation in balanced growth

H. Dourado, W. Liebermeister, O. Ebenhoeh, M. J. Lercher

This paper introduces Growth Mechanics (GM), a framework for analyzing optimal resource allocation in cellular growth models using Lagrangian formalism and KKT conditions.

bioRxiv · Oct 27, 2022Biophysics

Shifts in carbon partitioning by photosynthetic activity increase terpenoid synthesis in glandulartrichomes

N. P. Saadat, M. van Aalst, A. Brand, O. Ebenhoeh, A. F. Tissier, A. B. Matuszynska

The paper uses computational methods and multi-omics data to show that increased light intensities shift carbon partitioning in glandular trichomes, enhancing monoterpene production.

bioRxiv · Sep 29, 2022Plant Biology

Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models

S. E. Wilken, M. Besancon, M. Kratochvil, C. A. F. Kuate, C. Trefois, W. Gu, O. Ebenhoeh

This paper differentiates optimal solutions of constraint-based metabolic models to calculate sensitivities of reaction fluxes and enzyme concentrations to turnover numbers, improving parameter estimation and connecting to metabolic control analysis.

bioRxiv · Jul 11, 2022Bioengineering

Uncoupling of the Diurnal Growth Program by Artificial Genome Relaxation in Synechocystis sp. PCC 6803

A. Behle, M. Dietsch, L. Goldschmidt, W. Murugathas, D. Brandt, T. Busche, J. Kalinowski, O. Ebenhoeh, I. M. Axmann, R. Machne

The paper manipulates DNA supercoiling in Synechocystis sp. PCC 6803 using CRISPRi and TopoI overexpression, revealing its role in diurnal gene regulation and growth.

bioRxiv · Jul 26, 2021 · PreprintMicrobiology

The view of microbes as energy converters illustrates the trade-off between growth rate and yield

S. E. Wilken, V. V. Frazao, N. P. Saadat, O. Ebenhoeh

This paper reviews black box models and thermodynamic integration in genome-scale metabolic models to understand the trade-off between microbial growth rate and yield.

bioRxiv · Apr 16, 2021Bioengineering

An integrative approach to investigate natural variation in the accumulation of aliphatic glucosinolates in Arabidopsis thaliana

S. Sharma, O. Popa, O. Ebenhoeh, S. Kopriva

The paper investigates natural variation in aliphatic glucosinolate accumulation in Arabidopsis thaliana by analyzing genetic and metabolic diversity across ecotypes.

bioRxiv · Nov 13, 2019 · PreprintPlant Biology

The importance of the photosynthetic Gibbs effect in the elucidation of the Calvin-Benson-Bassham Cycle

O. Ebenhoeh, S. Spelberg

The paper discusses the historical and scientific context of the Calvin-Benson-Bassham Cycle, focusing on the photosynthetic Gibbs effect and its implications for understanding the cycle's structure and dynamics.

bioRxiv · Oct 10, 2017Biochemistry