Author

Parth Agarwal

University of Oxford

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:deep learning· 2 Organism:human· 2 Assay:proteomics· 2 Research Focus:cell type annotation· 1 Assay:CITE-seq· 1 Approach:experimental assay· 1 Organism:mouse· 1

Frequent Co-Authors

Charlotte Mary DeaneiD· 3 shared Alexander Greenshields‐WatsoniD· 2 shared Broncio Aguilar-SanjuaniD· 2 shared Fergus BoylesiD· 2 shared Gemma L. GordoniD· 2 shared Alexander Greenshields-Watson· 1 shared Alissa M. HummeriD· 1 shared Ana G Lujan HernandeziD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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3 shared papersImmunology

Charlotte Mary DeaneORCID

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3 papers

Recent·Most cited

ANARCII: A Generalised Language Model for Antigen Receptor Numbering

Alexander Greenshields‐Watson, Parth Agarwal, Sarah A. Robinson, Benjamin Heathcote Williams, Gemma L. Gordon, Henriette Capel, Yushi Li, Fabian C. Spoendlin, Broncio Aguilar-Sanjuan, Fergus Boyles, Charlotte Mary Deane

ANARCII is a language model that numbers antigen receptor sequences without alignment, achieving high accuracy and efficiency for diverse sequences.

bioRxiv · Apr 16, 2025 · PreprintBioinformatics

PLAbDab-nano: a database of camelid and shark nanobodies from patents and literature

Gemma L Gordon, Alexander Greenshields‐Watson, Parth Agarwal, Ashley Wong, Fergus Boyles, Alissa M. Hummer, Ana G Lujan Hernandez, Charlotte Mary Deane

PLAbDab-nano is a database of 5000 annotated VHH and VNAR nanobody sequences from camelids and sharks, providing a resource for designing libraries and finding similar sequences.

Nucleic Acids Research · Oct 3, 2024Peer-reviewedImmunology

The Observed T cell receptor Space database enables paired-chain repertoire mining, coherence analysis and language modelling

Matthew I.J. Raybould, Alexander Greenshields-Watson, Parth Agarwal, Broncio Aguilar-Sanjuan, Tobias H. Olsen, Oliver M. Turnbull, Nele P. Quast, Charlotte M. Deane

The paper introduces the OTS database, a curated resource of paired-chain TCR sequences, and develops a language model for analyzing TCR pairings and coherence.

bioRxiv · May 20, 2024Immunology