Henriette Capel

SAbDab2: The structural antibody database in the age of machine learning

SAbDab2 provides updated antibody structures with machine learning-ready data and standardized splits for research.

Pox-AbDab: the Orthopoxvirus Antibody Database

This paper introduces Pox-AbDab, a database of antibodies against orthopoxviruses, highlighting challenges in cross-species antibody function and identifying gaps in research.

LICHEN: Light-chain Immunoglobulin sequence generation Conditioned on the Heavy chain and Experimental Needs

LICHEN generates light-chain antibody sequences conditioned on heavy chains and experimental needs, producing valid, diverse, and functional sequences.

ANARCII: A Generalised Language Model for Antigen Receptor Numbering

ANARCII is a language model that numbers antigen receptor sequences without alignment, achieving high accuracy and efficiency for diverse sequences.

ProteinGLUE: A multi-task benchmark suite for self-supervised protein modeling.

The paper introduces ProteinGLUE, a benchmark suite for evaluating self-supervised protein models, showing pre-training improves downstream tasks but smaller models perform better than larger ones.

SeRenDIP-CE: Sequence-based Interface Prediction for Conformational Epitopes

The paper introduces SeRenDIP-CE, a sequence-based method for predicting conformational epitopes, achieving better performance than existing predictors on an antibody-antigen structure.