Author

Gemma L. Gordon

University of OxfordORCID 0000-0002-8259-9111Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:proteomics· 2 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Charlotte Mary DeaneiD· 3 shared Alexander Greenshields‐WatsoniD· 2 shared Fergus BoylesiD· 2 shared Parth Agarwal· 2 shared Alissa M. HummeriD· 1 shared Ana G Lujan HernandeziD· 1 shared Ashley Wong· 1 shared Benjamin Heathcote WilliamsiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersBioinformatics

Charlotte Mary DeaneORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

The Therapeutic Nanobody Profiler: characterising and predicting nanobody developability to improve therapeutic design

Gemma L. Gordon, João Henrique Diniz Brandão Gervásio, Colby Souders, Charlotte Mary Deane

The paper introduces TNP, a computational tool for predicting nanobody developability, calibrated with clinical-stage sequences and experimental data.

bioRxiv · Aug 11, 2025 · PreprintBioinformatics

ANARCII: A Generalised Language Model for Antigen Receptor Numbering

Alexander Greenshields‐Watson, Parth Agarwal, Sarah A. Robinson, Benjamin Heathcote Williams, Gemma L. Gordon, Henriette Capel, Yushi Li, Fabian C. Spoendlin, Broncio Aguilar-Sanjuan, Fergus Boyles, Charlotte Mary Deane

ANARCII is a language model that numbers antigen receptor sequences without alignment, achieving high accuracy and efficiency for diverse sequences.

bioRxiv · Apr 16, 2025 · PreprintBioinformatics

PLAbDab-nano: a database of camelid and shark nanobodies from patents and literature

Gemma L Gordon, Alexander Greenshields‐Watson, Parth Agarwal, Ashley Wong, Fergus Boyles, Alissa M. Hummer, Ana G Lujan Hernandez, Charlotte Mary Deane

PLAbDab-nano is a database of 5000 annotated VHH and VNAR nanobody sequences from camelids and sharks, providing a resource for designing libraries and finding similar sequences.

Nucleic Acids Research · Oct 3, 2024Peer-reviewedImmunology