Author

R. Denise

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

E. P. Rocha· 3 shared S. S. Abby· 2 shared C. J. Reed· 1 shared D. Sheppard· 1 shared G. Hutinet· 1 shared J. Babor· 1 shared J. Hourihan· 1 shared J.-L. Berry· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersMicrobiology

E. P. Rocha

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Beyond Blast: Enabling Microbiologists to Better Extract Literature, Taxonomic Distributions and Gene Neighborhood Information for Protein Families

C. J. Reed, R. Denise, J. Hourihan, J. Babor, M. Jaroch, M. Martinelli, G. Hutinet, V. de Crecy-Lagard

The paper evaluates tools for extracting literature and gene neighborhood data on protein family members and provides a workflow and web platforms for experimentalists and educators.

bioRxiv · May 3, 2023Microbiology

Identification of protein secretion systems in bacterial genomes using MacSyFinder version 2.

S. S. Abby, R. Denise, E. P. Rocha

The paper describes the use of MacSyFinder version 2 to identify protein secretion systems in bacterial genomes using pre-defined models and customizable pipelines.

bioRxiv · Jan 6, 2023 · PreprintMicrobiology

The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold

D. Sheppard, J.-L. Berry, R. Denise, E. P. Rocha, S. Matthews, V. Pelicic

The paper reports the structural and phylogenetic analysis of ComGC, a major pilin subunit of competence pili, revealing a novel and conserved type IV pilin fold across multiple bacterial species.

Journal of Biological Chemistry · May 1, 2020Peer-reviewedMicrobiology

Diversification of the type IV filament super-family into machines for adhesion, secretion, DNA transformation and motility

R. Denise, S. S. Abby, E. P. Rocha

The paper traces the evolutionary diversification of type IV filament systems in Bacteria and Archaea, showing how they adapted for motility, adhesion, secretion, and DNA transformation through gene duplication, fission, and horizontal transfer.

bioRxiv · Mar 13, 2019Evolutionary Biology