Author

S. S. Abby

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Evolutionary Biology· 1

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Approach:statistical model· 3 Organism:bacteria (other)· 2 Research Focus:clustering· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2

Frequent Co-Authors

C. Schleper· 4 shared M. Kerou· 3 shared E. P. Rocha· 2 shared R. Denise· 2 shared R. Zhao· 2 shared S. L. Jorgensen· 2 shared C. Rossel· 1 shared D. Roerdink· 1 shared

Activity by Year

2017-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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4 shared papersMicrobiology

C. Schleper

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Identification of protein secretion systems in bacterial genomes using MacSyFinder version 2.

S. S. Abby, R. Denise, E. P. Rocha

The paper describes the use of MacSyFinder version 2 to identify protein secretion systems in bacterial genomes using pre-defined models and customizable pipelines.

bioRxiv · Jan 6, 2023 · PreprintMicrobiology

Ancestral reconstructions decipher major adaptations of ammonia oxidizing archaea upon radiation into moderate terrestrial and marine environments

S. S. Abby, M. Kerou, C. Schleper

This study reconstructs the evolutionary adaptations of ammonia oxidizing archaea (AOA) as they transitioned into moderate terrestrial and marine environments.

bioRxiv · Jun 28, 2020Microbiology

Genomes of Thaumarchaeota from deep sea sediments reveal specific adaptations of three independently evolved lineages

M. Kerou, R. I. Ponce-Toledo, R. Zhao, S. S. Abby, M. Hirai, H. Nomaki, Y. Takaki, T. Nunoura, S. L. Jorgensen, C. Schleper

The paper presents 11 metagenome-assembled genomes of ammonia oxidizing archaea from marine sediments, revealing three independently evolved lineages with specific adaptations to deep-sea conditions.

bioRxiv · Jun 24, 2020Microbiology

In situ growth of anammox bacteria in subseafloor sediments

R. Zhao, J. M. Mogollon, S. S. Abby, C. Schleper, J. F. Biddle, D. Roerdink, I. H. Thorseth, S. L. Jorgensen

The paper reports the in situ growth of anammox bacteria in 80,000-year-old subseafloor sediments, showing increased abundance and genomic evidence of active replication.

bioRxiv · Aug 11, 2019Microbiology

Diversification of the type IV filament super-family into machines for adhesion, secretion, DNA transformation and motility

R. Denise, S. S. Abby, E. P. Rocha

The paper traces the evolutionary diversification of type IV filament systems in Bacteria and Archaea, showing how they adapted for motility, adhesion, secretion, and DNA transformation through gene duplication, fission, and horizontal transfer.

bioRxiv · Mar 13, 2019Evolutionary Biology

Candidatus Nitrosocaldus cavascurensis, an ammonia oxidizing, extremely thermophilic archaeon with a highly mobile genome

S. S. Abby, M. Melcher, M. Kerou, M. Krupovic, M. Stieglmeier, C. Rossel, K. Pfeifer, C. Schleper

This paper describes the cultivation and genome analysis of Candidatus Nitrosocaldus cavascurensis, an extremely thermophilic ammonia-oxidizing archaeon, revealing its unique genetic features and potential adaptive strategies.

bioRxiv · Dec 29, 2017Microbiology