Author

R. Souza

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

A. D. Harris· 1 shared A. DeLaForest· 1 shared A. Qayyum· 1 shared C. A. Thompson· 1 shared C. Rodero· 1 shared D. M. J. Van de Sande· 1 shared G. Dias· 1 shared G. S. Drenthen· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioengineering

A. D. Harris

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Author profile →

2 papers

Recent·Most cited

Advancing GABA-edited MRS Research through a Reconstruction Challenge

R. P. Berto, H. Bugler, G. Dias, M. Oliveira, L. Ueda, S. Dertkigil, P. D. P. Costa, L. Rittner, J. P. Merkofer, D. M. J. Van de Sande, S. Amirrajab, G. S. Drenthen, M. Veta, J. F. A. Jansen, M. Breeuwer, , A. D. Harris

This paper presents a benchmark challenge to compare machine learning models for GABA-edited MRS reconstruction using reduced transients, finding that deep learning models achieve comparable metrics to conventional methods.

bioRxiv · Sep 21, 2023Bioengineering

GATA4, expressed in Barrett's esophagus and esophageal adenocarcinoma, can block squamous epithelial cell gene expression in human esophageal cells

R. Stavniichuk, A. DeLaForest, C. A. Thompson, J. Miller, R. Souza, M. A. Battle

This study shows that GATA4, expressed in Barrett's esophagus and esophageal adenocarcinoma, represses squamous epithelial cell genes by directly binding to their promoters.

bioRxiv · Jun 17, 2020 · PreprintCell Biology