Author

Rachel Silverstein

Massachusetts Institute of Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Organism:Drosophila· 1 Approach:experimental assay· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Andre CornmaniD· 1 shared Anna ShipmaniD· 1 shared Britney Haymans· 1 shared Christopher NaumaniD· 1 shared Leonard L. DobensiD· 1 shared Matt Tranzillo· 1 shared Nicolo G. Zulaybar· 1 shared Yunha HwangiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 12 mutual co-author links

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1 shared paperMicrobiology

Andre CornmanORCID

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2 papers

Recent·Most cited

Discovery of microbial intergenic features with genomic language modeling and multimodal search

Nicolo G. Zulaybar, Matt Tranzillo, Rachel Silverstein, Yunha Hwang, Andre Cornman

The paper identifies microbial intergenic features using a sparse autoencoder and multimodal search, revealing previously uncharacterized regulatory DNA and structured RNA elements.

bioRxiv · Sep 17, 2026 · PreprintMicrobiology

A screen for targets of the Drosophila pseudokinase Tribbles identifies Neuralized and Mindbomb, ubiquitin ligases that mediate Notch signaling

Anna Shipman, Christopher Nauman, Britney Haymans, Rachel Silverstein, Leonard L. Dobens

The paper identifies Neuralized and Mindbomb as Tribbles targets that modulate Notch signaling by stabilizing their proteins and suppressing their activity in Drosophila.

bioRxiv · Aug 31, 2018 · PreprintDevelopmental Biology