Author

Rahul Shrestha

Helmholtz Munich

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:mouse· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Research Focus:deconvolution· 1

Frequent Co-Authors

Benjamin RombautiD· 1 shared Elyas HeidariiD· 1 shared Fabian Joachim TheisiD· 1 shared Giovanni PallaiD· 1 shared Giuseppe-Antonio SaldiiD· 1 shared Harald S. VöhringeriD· 1 shared Ilia KatsiD· 1 shared Isaac VirshupiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Benjamin RombautORCID

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2 papers

Recent·Most cited

Nuclear Myosin 1 links genomic architecture to adipose tissue remodeling, metabolic inflammation and obesity in mice

Samira Khalaji, Tomáš Venit, Zuzana Lukacova, Valentina Fambri, Rahul Shrestha, Sachin Kaluarachchi, Maylis Boitet, Maud Fagny, Giuseppe-Antonio Saldi, Piergiorgio Percipalle

This study shows NM1 regulates adipose tissue remodeling, metabolic inflammation, and obesity in mice by controlling chromatin accessibility and gene expression during adipogenesis.

Cell Death and Disease · Feb 26, 2026Peer-reviewedCell Biology

SpatialData: an open and universal data framework for spatial omics

Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul Shrestha, Benjamin Rombaut, Lotte Pollaris, Laurens Lehner, Harald S. Vöhringer, Ilia Kats, , Oliver Stegle

SpatialData, a Zarr/OME-NGFF-based format plus Python library, unifies images, labels, points, shapes and tables across spatial omics platforms with coordinate alignment, lazy loading and cross-modal aggregation.

Nature Methods · Mar 20, 2024Peer-reviewedBioinformatics✦ In-depth digest