Author

Raju Sarkar

Indian Institute of Science Education and Research Kolkata

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:protein folding & dynamics· 2 Assay:structural biology· 2 Approach:deep learning· 1 Approach:mechanistic / dynamical model· 1 Assay:proteomics· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1 Organism:virus· 1

Frequent Co-Authors

Susmita RoyiD· 3 shared Anushree SinhaiD· 2 shared Akhilesh JaiswariD· 1 shared Amrita Chakraborty· 1 shared Arpita Mahata· 1 shared Avijit MainaniD· 1 shared Dibyamanjaree Samant· 1 shared Madhav B. Nair· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBiophysics

Susmita RoyORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Mapping Allosteric Rewiring in Viral RNA: Sequence-Encoded Control of Protein Binding Mechanisms

Dibyamanjaree Samant, Amrita Chakraborty, Anushree Sinha, Raju Sarkar, Susmita Roy

This study maps allosteric rewiring in viral RNA by analyzing how sequence changes affect protein binding mechanisms through molecular dynamics and graph-network analysis.

Biophysical Journal · Mar 1, 2026Peer-reviewedBiophysics

Free Energy Landscape of Magnesium Chelation Reveals Dynamic Pre-Chelate Complexes Stabilized by Meta-Sphere RNA-Ion Coordination

Akhilesh Jaiswar, Raju Sarkar, Avijit Mainan, Rimi Kundu, Susmita Roy

The paper uses simulations to analyze Mg2+ coordination with RNA, identifying dynamic pre-chelate complexes and a new meta-sphere coordination mechanism.

bioRxiv · May 20, 2025 · PreprintBiophysics

EVOLVE: A Web Platform for Evolutionary Phase Analysis and New Variant Exploration from Multi-Sequence Data

Satyam Sangeet, Anushree Sinha, Madhav B. Nair, Arpita Mahata, Raju Sarkar, Susmita Roy

EVOLVE is a web platform that analyzes multi-sequence data to identify concerning variants using phase transition principles and provides tools for exploring mutational metrics.

Journal of Chemical Information and Modeling · May 1, 2025Peer-reviewedBiophysics